2023-05-31
REL
PDBe
PDBe
PDBe
2020-06-11
2021-03-17
2021-03-17
2023-05-31
Academy of Finland
315950
Finland
Sigrid Juselius Foundation
Finland
Coxsackievirus B4 in complex with capsid binder compound 48
Flatt JW
Domanska A
Butcher SJ
Flatt JW
Domanska A
Seppala AL
Butcher SJ
Identification of a conserved virion-stabilizing network inside the interprotomer pocket of enteroviruses.
Commun Biol
UK
4
250
250
2021
33637854
doi:10.1038/s42003-021-01779-x
2399-3642
EMD-11165
associated EM volume
Coxsackievirus B4 in complex with capsid binder compound 48
6zck
FULLOVERLAP
Coxsackievirus B4 (strain E2)
Coxsackievirus B4 (strain E2)
0
1
2
3
4
Virus harvested in BGM cells and purified in CsCl gradient.
Coxsackievirus B4 (strain E2)
Homo sapiens
Icosahedron
300.0
3
VIRION
STRAIN
false
false
Capsid protein VP1
Coxsackievirus B4 (strain E2)
E2
0.030685498
1
LEVO
MGRVADTIARGPSNSEQIPALTAVETGHTSQVDPSDTMQTRHVHNYHSRSESSIENFLCRSACVIYIKYSSAESNNLKRY
AEWVINTRQVAQLRRKMEMFTYIRCDMELTFVITSHQEMSTATNSDVPVQTHQIMYVPPGGPVPTSVNDYVWQTSTNPSI
FWTEGNAPPRMSIPFMSIGNAYTMFYDGWSNFSRDGIYGYNSLNNMGTIYARHVNDSSPGGLTSTIRIYFKPKHVKAYVP
RPPRLCQYKKAKNVNFDVEAVTTERASLVTT
Capsid protein VP2
Coxsackievirus B4 (strain E2)
E2
0.027708069999999998
1
LEVO
SDRVRSITLGNSTITTQECANVVVGYGVWPDYLSDEEATAEDQPTQPDVATCRFYTLNSVKWEMQSAGWWWKFPDALSEM
GLFGQNMQYHYLGRSGYTIHVQCNASKFHQGCLLVVCVPEAEMGCTNAENAPTYGDLCGGETAKQFEQNAVTGETAVQTA
VCNAGMGVGVGNLTIYPHQWINLRTNNSATIVMPYINSVPMDNMFRHNNFTLMIIPFAPLDYVTGASSYIPITVTVAPMS
AEYNGLRLAGHQ
Capsid protein VP3
Coxsackievirus B4 (strain E2)
E2
0.026444159999999998
1
LEVO
GLPTMLTPGSTQFLTSDDFQSPSAMPQFDVTPEMNIPGQVRNLMEIAEVDSVVPINNLQANLKTMEAYRVQVRSTDEMGG
QIFGFPLQPGASSVLQRTLLGEILNYYTHWSGSLKLTFVFCGSAMATGKFLLAYSPPGAGAPDSRKNAMLGTHVIWDVGL
QSSCVLCVPWISQTHYRYVVDDKYTASGFISCWYQTNVIVPAEAQKSCYIMCFVSACNDFSVRMLRDTQFIKQDTFYQ
Capsid protein VP4
Coxsackievirus B4 (strain E2)
E2
0.007499234999999999
1
LEVO
MGAQVSTQKTGAHETSLSASGNSIIHYTNINYYKDAASNSANRQDFTQDPSKFTEPVKDVMIKSLPALN
4-[(6-propoxynaphthalen-2-yl)sulfonylamino]benzoic acid
0.000385434
1
QFW
singleParticle
particle
7.0
10.0
C8H18N2O4S
Hepes
150.0
NaCl
Sodium chloride
2.0
MgCl2
Magnesium chloride
2.0
CaCl2
Calcium chloride
PELCO Ultrathin Carbon with Lacey Carbon
GLOW DISCHARGE
Ted Pella product No. 01824
ETHANE
HOMEMADE PLUNGER
purified virus mixed with compound 48, incubated at room temperature for 30 minutes before plunging.
FEI TITAN KRIOS
FLOOD BEAM
BRIGHT FIELD
FIELD EMISSION GUN
300
0.6
3.0
GATAN K2 SUMMIT (4k x 4k)
COUNTING
47.0
1
2.7
FSC 0.143 CUT-OFF
RELION
3
13252
MAXIMUM LIKELIHOOD
MAXIMUM LIKELIHOOD