2021-06-02
REL
PDBe
PDBe
PDBe
2020-07-08
2020-07-22
2020-07-22
2021-06-02
Medical Research Council (MRC, United Kingdom)
MC_UP_1201/16
United Kingdom
European Research Council (ERC)
ERC-CoG-648432
European Union
German Research Foundation (DFG)
240245660 - SFB1129
Germany
Medical Research Council (MRC, United Kingdom)
MC_UP_A025_1013
United Kingdom
Structure of SARS-CoV-2 Spike Protein Trimer (K986P, V987P, single Arg S1/S2 cleavage site) in Closed State
Qu K
Xiong X
Scheres SHW
Briggs JAG
Xiong X
Qu K
Ciazynska KA
Hosmillo M
Carter AP
Ebrahimi S
Ke Z
Scheres SHW
Bergamaschi L
Grice GL
Zhang Y
Nathan JA
Baker S
James LC
Baxendale HE
Goodfellow I
Doffinger R
Briggs JAG
A thermostable, closed SARS-CoV-2 spike protein trimer.
Nat.Struct.Mol.Biol.
US
27
934
941
2020
32737467
doi:10.1038/s41594-020-0478-5
1545-9985
EMD-11333
associated EM volume
Structure of SARS-CoV-2 Spike Protein Trimer (K986P, V987P, single Arg S1/S2 cleavage site) in Closed State
6zp1
FULLOVERLAP
SARS-CoV-2 Spike Protein Trimer
SARS-CoV-2 Spike Protein Trimer
0
1
K986P, V987P, Single Arg S1/S2 cleavage site
Severe acute respiratory syndrome coronavirus 2
WIV-04
Homo sapiens
Expi293
pCDNA3.1
0.028
Spike glycoprotein
Severe acute respiratory syndrome coronavirus 2
0.138278828
3
Homo sapiens
LEVO
ETGTQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDG
VYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFE
YVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYL
TPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRF
PNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQ
IAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCY
FPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDI
ADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGC
LIGAEHVNNSYECDIPIGAGICASYQTQTNSRSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTK
TSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPS
KRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAA
LQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAI
SSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFP
QSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIV
NNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKGS
GRENLYFQGGGGSGYIPEAPRDGQAYVRKDGEWVLLSTFLGHHHHHH
2-acetamido-2-deoxy-beta-D-glucopyranose
0.000221208
33
NAG
singleParticle
particle
0.6
7.4
148.0
NaCl
sodium chloride
8.0
Na2HPO4
disodium hydrogen phospahte
2.0
KH2PO4
potassium dihydrogen phospahte
0.01
C14H28O6
octyl glucoside
C-flat-2/2
CARBON
HOLEY ARRAY
ETHANE
100
298
FEI VITROBOT MARK IV
FEI TITAN KRIOS
FLOOD BEAM
BRIGHT FIELD
FIELD EMISSION GUN
300
2.7
1.0
3.0
81000.0
FEI TITAN KRIOS AUTOGRID HOLDER
NITROGEN
GIF Quantum LS
GATAN K3 (6k x 4k)
COUNTING
1
4563
50.0
1
3376871
template picking
CTFFIND
4.1.13
C3
3.3
FSC 0.143 CUT-OFF
RELION
3.1
59857
NOT APPLICABLE
RELION
3.1
NOT APPLICABLE
RELION
3.1
8
RELION
3.1
6VXX
A
RIGID BODY FIT
correlation coefficient
REAL
117.0
emd_11333_additional_1.map.gz
1
IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)
256
256
256
0
0
0
256
256
256
271.616
271.616
271.616
90.0
90.0
90.0
|
X
Y
Z
-0.025917662
0.07253135
6.310199e-05
0.0025072708
1.061
1.061
1.061
Unsharpened Map