2020-07-01
REL
RCSB
RCSB
RCSB
2020-02-01
2020-03-18
2020-07-01
2020-07-01
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)
United States
Cryo-EM structure of HTLV-1 instasome
Bhatt V
Shi K
Sundborger A
Aihara H
Bhatt V
Shi K
Salamango DJ
Moeller NH
Pandey KK
Bera S
Bohl TE
Kurniawan F
Orellana K
Zhang W
Grandgenett DP
Harris RS
Sundborger-Lunna AC
Aihara H
Structural basis of host protein hijacking in human T-cell leukemia virus integration.
Nat Commun
UK
11
3121
3121
2020
32561747
doi:10.1038/s41467-020-16963-6
2041-1723
EMD-21301
associated EM volume
Cryo-EM structure of HTLV intasome
6voy
FULLOVERLAP
HTLV1 intasome
HTLV1 intasome
0
1
2
3
4
5
Human T-cell leukemia virus type I
Escherichia coli
DNA-binding protein 7d
Human T-cell leukemia virus type I
0.04365268
4
Escherichia coli
LEVO
MGSSHHHHHHSSGLVPRGSHMATVKFKYKGEEKEVDISKIKKVARVGKMISFTYDEGGGKTGEGAVSEKDAPKELLQMLE
KQKKGGSLEVLFQGPSPAELHSFTHCGQTALTLQGATTTEASNILRSCHACRKNNPQHQMPRGHIRRGLLPNHIWQGDIT
HFKYKNTLYRLHVWVDTFSGAISATQKRKETSSEAISSLLQAIAYLGKPSYINTDNGPAYISQDFLNMCTSLAIRHTTHV
PYNPTSSGLVQRSNGILKTLLYKYFTDKPDLPMDNALSIALWTINHLNVLTNCHKTRWQLHHSPRLQPIPETRSLSNKQT
HWYYFKLPGLNSRQWKGPQEALQEAAGAALIPVSASSAQWIPWRLLKRAACPRPVGGPADPKEKDHQHHG
Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform
Homo sapiens
0.040357789
2
Escherichia coli
LEVO
IRDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEPIYPEVVHMFAVNMFRTLPP
SSNPTGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRI
YGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAY
CVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYY
WNNEYIMSLISDNAAKILPIMFP
DNA (5'-D(P*AP*CP*AP*CP*AP*CP*TP*TP*GP*AP*CP*TP*AP*GP*GP*GP*TP*G)-3')
Homo sapiens
0.015074711
2
(DC)(DC)(DA)(DG)(DG)(DA)(DG)(DA)(DG)(DA)(DA)(DA)(DT)(DT)(DT)(DA)(DG)(DT)(DA)(DC)
(DA)(DC)(DA)(DG)(DA)(DT)(DA)(DT)(DC)(DC)(DA)(DC)(DC)(DC)(DT)(DA)(DG)(DT)(DC)(DA)
(DA)(DG)(DT)(DG)(DT)(DG)(DT)(DC)(DC)
DNA
DNA (25-MER)
Human T-cell leukemia virus type I
0.007614918
2
(DA)(DC)(DT)(DG)(DT)(DG)(DT)(DA)(DC)(DT)(DA)(DA)(DA)(DT)(DT)(DT)(DC)(DT)(DC)(DT)
(DC)(DC)(DT)(DG)(DG)
DNA
DNA (5'-D(P*AP*CP*AP*CP*AP*CP*TP*TP*GP*AP*CP*TP*AP*GP*GP*GP*TP*G)-3')
Human T-cell leukemia virus type I
0.006199017
2
(DG)(DG)(DA)(DC)(DA)(DC)(DA)(DC)(DT)(DT)(DG)(DA)(DC)(DT)(DA)(DG)(DG)(DG)(DT)(DG)
DNA
ZINC ION
6.5409e-05
4
ZN
MAGNESIUM ION
2.4305e-05
2
MG
singleParticle
particle
7.5
NITROGEN
FEI TITAN KRIOS
FLOOD BEAM
BRIGHT FIELD
FIELD EMISSION GUN
300
FEI FALCON III (4k x 4k)
30.0
1
C2
3.7
FSC 0.143 CUT-OFF
RELION
3.08
30434
RANDOM ASSIGNMENT
RANDOM ASSIGNMENT