2020-07-29
REL
RCSB
RCSB
RCSB
2020-02-25
2020-03-11
2020-03-11
2020-07-29
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)
R01GM120553
United States
SARS-CoV-2 spike ectodomain structure (open state)
Walls AC
Park YJ
Tortorici MA
Wall A
Seattle Structural Genomics Center for Infectious Disease (SSGCID)
McGuire AT
Veesler D
Walls AC
Park YJ
Tortorici MA
Wall A
McGuire AT
Veesler D
Structure, Function, and Antigenicity of the SARS-CoV-2 Spike Glycoprotein.
Cell
181
281
2020
32155444
doi:10.1016/j.cell.2020.02.058
1097-4172
EMD-21452
other EM volume
SARS-CoV-2 spike ectodomain structure (closed state)
EMD-21457
associated EM volume
SARS-CoV-2 spike ectodomain structure (open state)
6vyb
FULLOVERLAP
SARS-CoV-2 prefusion spike ectodomain
SARS-CoV-2 prefusion spike ectodomain
0
1
Severe acute respiratory syndrome coronavirus 2
Homo sapiens
Spike glycoprotein
Severe acute respiratory syndrome coronavirus 2
0.141533797
3
Homo sapiens
LEVO
MGILPSPGMPALLSLVSLLSVLLMGCVAETGTQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSN
VTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFL
GVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFS
ALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKC
TLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYG
VSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNL
KPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNF
NFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNEVAVLYQDVNCTEVP
VAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPSGAGSVASQSIIAYTMSLGA
ENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEV
FAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVL
PPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSST
ASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRAS
ANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTH
WFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQK
EIDRLNEVAKNLNESLIDLQELGKYEQYIKGSGRENLYFQGGGGSGYIPEAPRDGQAYVRKDGEWVLLSTFLGHHHHHHH
H
2-acetamido-2-deoxy-beta-D-glucopyranose
0.000221208
35
NAG
singleParticle
particle
8
unspecified
ETHANE
FEI TITAN KRIOS
FLOOD BEAM
BRIGHT FIELD
FIELD EMISSION GUN
300
GATAN K2 SUMMIT (4k x 4k)
70.0
1
ab initio
C1
3.2
FSC 0.143 CUT-OFF
RELION
197005
PROJECTION MATCHING
PROJECTION MATCHING
RELION
emd_21457_additional_1.map.gz
1
IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)
400
400
400
0
0
0
400
400
400
419.99997
419.99997
419.99997
90.0
90.0
90.0
|
X
Y
Z
-0.73124105
2.017604
-0.00082011666
0.045458466
1.05
1.05
1.05
Unsharpened map