2024-03-06
REL
RCSB
RCSB
RCSB
2020-03-17
2020-10-21
2020-10-21
2024-03-06
Canadian Institutes of Health Research (CIHR)
CIHR PJT- 153044
Canada
30S-Activated-high-Mg2+
Jahagirdar D
Jha V
30S subunit, conformations, inactive, activated, RIBOSOME
Jahagirdar D
Jha V
Basu K
Gomez-Blanco J
Vargas J
Ortega J
Alternative conformations and motions adopted by 30S ribosomal subunits visualized by cryo-electron microscopy.
Rna
UK
26
2017
2030
2020
32989043
doi:10.1261/rna.075846.120
1469-9001
2122
RNARFU
6w6k
FULLOVERLAP
30S-Activated-high-Mg2+
30S-Activated-high-Mg2+
0
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
Escherichia coli K-12
16S rRNA
Escherichia coli (strain K12)
K12
0.499690031
1
AAAUUGAAGAGUUUGAUCAUGGCUCAGAUUGAACGCUGGCGGCAGGCCUAACACAUGCAAGUCGAACGGUAACAGGAAGA
AGCUUGCUUCUUUGCUGACGAGUGGCGGACGGGUGAGUAAUGUCUGGGAAACUGCCUGAUGGAGGGGGAUAACUACUGGA
AACGGUAGCUAAUACCGCAUAACGUCGCAAGACCAAAGAGGGGGACCUUCGGGCCUCUUGCCAUCGGAUGUGCCCAGAUG
GGAUUAGCUAGUAGGUGGGGUAACGGCUCACCUAGGCGACGAUCCCUAGCUGGUCUGAGAGGAUGACCAGCCACACUGGA
ACUGAGACACGGUCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGCACAAUGGGCGCAAGCCUGAUGCAGCCAUGC
CGCGUGUAUGAAGAAGGCCUUCGGGUUGUAAAGUACUUUCAGCGGGGAGGAAGGGAGUAAAGUUAAUACCUUUGCUCAUU
GACGUUACCCGCAGAAGAAGCACCGGCUAACUCCGUGCCAGCAGCCGCGGUAAUACGGAGGGUGCAAGCGUUAAUCGGAA
UUACUGGGCGUAAAGCGCACGCAGGCGGUUUGUUAAGUCAGAUGUGAAAUCCCCGGGCUCAACCUGGGAACUGCAUCUGA
UACUGGCAAGCUUGAGUCUCGUAGAGGGGGGUAGAAUUCCAGGUGUAGCGGUGAAAUGCGUAGAGAUCUGGAGGAAUACC
GGUGGCGAAGGCGGCCCCCUGGACGAAGACUGACGCUCAGGUGCGAAAGCGUGGGGAGCAAACAGGAUUAGAUACCCUGG
UAGUCCACGCCGUAAACGAUGUCGACUUGGAGGUUGUGCCCUUGAGGCGUGGCUUCCGGAGCUAACGCGUUAAGUCGACC
GCCUGGGGAGUACGGCCGCAAGGUUAAAACUCAAAUGAAUUGACGGGGGCCCGCACAAGCGGUGGAGCAUGUGGUUUAAU
UCGAUGCAACGCGAAGAACCUUACCUGGUCUUGACAUCCACGGAAGUUUUCAGAGAUGAGAAUGUGCCUUCGGGAACCGU
GAGACAGGUGCUGCAUGGCUGUCGUCAGCUCGUGUUGUGAAAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCUUAUCC
UUUGUUGCCAGCGGUCCGGCCGGGAACUCAAAGGAGACUGCCAGUGAUAAACUGGAGGAAGGUGGGGAUGACGUCAAGUC
AUCAUGGCCCUUACGACCAGGGCUACACACGUGCUACAAUGGCGCAUACAAAGAGAAGCGACCUCGCGAGAGCAAGCGGA
CCUCAUAAAGUGCGUCGUAGUCCGGAUUGGAGUCUGCAACUCGACUCCAUGAAGUCGGAAUCGCUAGUAAUCGUGGAUCA
GAAUGCCACGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACACCAUGGGAGUGGGUUGCAAAAGAAGUAGGU
AGCUUAACCUUCGGGAGGGCGCUUACCACUUUGUGAUUCAUGACUGGGGUGAAGUCGUAACAAGGUAACCGUAGGGGAAC
CUGCGGUUGGAUCACCUCCUUA
CP047127.1
30S ribosomal protein S3
Escherichia coli (strain K12)
K12
0.026031316
1
LEVO
MGQKVHPNGIRLGIVKPWNSTWFANTKEFADNLDSDFKVRQYLTKELAKASVSRIVIERPAKSIRVTIHTARPGIVIGKK
GEDVEKLRKVVADIAGVPAQINIAEVRKPELDAKLVADSITSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGA
EIARTEWYREGRVPLHTLRADIDYNTSEAHTTYGVIGVKVWIFKGEILGGMAAVEQPEKPAAQPKKQQRKGRK
P0A7V3
30S ribosomal protein S4
Escherichia coli (strain K12)
K12
0.023514199
1
LEVO
MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQKVRRIYGVLERQFRNYYKEAA
RLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALE
LAEQREKPTWLEVDAGKMEGTFKRKPERSDLSADINEHLIVELYSK
P0A7V8
30S ribosomal protein S5
Escherichia coli (strain K12)
K12
0.017629398
1
LEVO
MAHIEKQAGELQEKLIAVNRVSKTVKGGRIFSFTALTVVGDGNGRVGFGYGKAREVPAAIQKAMEKARRNMINVALNNGT
LQHPVKGVHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPINVVRATIDGLENMNSPEMVAAKRGKS
VEEILGK
P0A7W1
30S ribosomal protein S6
Escherichia coli (strain K12)
K12
0.015727512
1
LEVO
MRHYEIVFMVHPDQSEQVPGMIERYTAAITGAEGKIHRLEDWGRRQLAYPINKLHKAHYVLMNVEAPQEVIDELETTFRF
NDAVIRSMVMRTKHAVTEASPMVKAKDERRERRDDFANETADDAEAGDSEEEEEE
P02358
30S ribosomal protein S8
Escherichia coli (strain K12)
K12
0.014146557
1
LEVO
MSMQDPIADMLTRIRNGQAANKAAVTMPSSKLKVAIANVLKEEGFIEDFKVEGDTKPELELTLKYFQGKAVVESIQRVSR
PGLRIYKRKDELPKVMAGLGIAVVSTSKGVMTDRAARQAGLGGEIICYVA
P0A7W7
30S ribosomal protein S9
Escherichia coli (strain K12)
K12
0.01488627
1
LEVO
MAENQYYGTGRRKSSAARVFIKPGNGKIVINQRSLEQYFGRETARMVVRQPLELVDMVEKLDLYITVKGGGISGQAGAIR
HGITRALMEYDESLRSELRKAGFVTRDARQVERKKVGLRKARRRPQFSKR
P0A7X3
30S ribosomal protein S10
Escherichia coli (strain K12)
K12
0.011755597
1
LEVO
MQNQRIRIRLKAFDHRLIDQATAEIVETAKRTGAQVRGPIPLPTRKERFTVLISPHVNKDARDQYEIRTHLRLVDIVEPT
EKTVDALMRLDLAAGVDVQISLG
P0A7R5
30S ribosomal protein S11
Escherichia coli (strain K12)
K12
0.013870974999999999
1
LEVO
MAKAPIRARKRVRKQVSDGVAHIHASFNNTIVTITDRQGNALGWATAGGSGFRGSRKSTPFAAQVAAERCADAVKEYGIK
NLEVMVKGPGPGRESTIRALNAAGFRITNITDVTPIPHNGCRPPKKRRV
P0A7R9
30S ribosomal protein S12
Escherichia coli (strain K12)
K12
0.013768156999999998
1
LEVO
MATVNQLVRKPRARKVAKSNVPALEACPQKRGVCTRVYTTTPKKPNSALRKVCRVRLTNGFEVTSYIGGEGHNLQEHSVI
LIRGGRVKDLPGVRYHTVRGALDCSGVKDRKQARSKYGVKRPKA
P0A7S3
30S ribosomal protein S13
Escherichia coli (strain K12)
K12
0.013128467
1
LEVO
MARIAGINIPDHKHAVIALTSIYGVGKTRSKAILAAAGIAEDVKISELSEGQIDTLRDEVAKFVVEGDLRREISMSIKRL
MDLGCYRGLRHRRGLPVRGQRTKTNARTRKGPRKPIKK
P0A7S9
30S ribosomal protein S14
Escherichia coli (strain K12)
K12
0.011606559999999998
1
LEVO
MAKQSMKAREVKRVALADKYFAKRAELKAIISDVNASDEDRWNAVLKLQTLPRDSSPSRQRNRCRQTGRPHGFLRKFGLS
RIKVREAAMRGEIPGLKKASW
P0AG59
30S ribosomal protein S15
Escherichia coli (strain K12)
K12
0.010319881999999999
1
LEVO
MSLSTEATAKIVSEFGRDANDTGSTEVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQRRKLLDYLKRKDVARYTR
LIERLGLRR
A0A4S5B232
30S ribosomal protein S16
Escherichia coli (strain K12)
K12
0.009207571999999999
1
LEVO
MVTIRLARHGAKKRPFYQVVVADSRNARNGRFIERVGFFNPIASEKEEGTRLDLDRIAHWVGQGATISDRVAALIKEVNK
AA
P0A7T3
30S ribosomal protein S17
Escherichia coli (strain K12)
K12
0.009724491
1
LEVO
MTDKIRTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKLHVHDENNECGIGDVVEIRECRPLSKTKSWTLVRVVE
KAVL
P0AG63
30S ribosomal protein S18
Escherichia coli (strain K12)
K12
0.009005471999999999
1
LEVO
MARYFRRRKFCRFTAEGVQEIDYKDIATLKNYITESGKIVPSRITGTRAKYQRQLARAIKRARYLSLLPYTDRHQ
P0A7T7
30S ribosomal protein S19
Escherichia coli (strain K12)
K12
0.010455355
1
LEVO
MPRSLKKGPFIDLHLLKKVEKAVESGDKKPLRTWSRRSTIFPNMIGLTIAVHNGRQHVPVFVTDEMVGHKLGEFAPTRTY
RGHAADKKAKKK
P0A7U3
30S ribosomal protein S20
Escherichia coli (strain K12)
K12
0.009708464
1
LEVO
MANIKSAKKRAIQSEKARKHNASRRSMMRTFIKKVYAAIEAGDKAAAQKAFNEMQPIVDRQAAKGLIHKNKAARHKANLT
AQINKLA
P0A7U7
MAGNESIUM ION
2.4305e-05
1
MG
singleParticle
particle
7.4
C-flat-2/2
COPPER
GLOW DISCHARGE
ETHANE
FEI TITAN KRIOS
FLOOD BEAM
BRIGHT FIELD
FIELD EMISSION GUN
300
FEI TITAN KRIOS AUTOGRID HOLDER
NITROGEN
FEI FALCON II (4k x 4k)
INTEGRATING
52.0
1
4V4Q
C1
3.6
FSC 0.143 CUT-OFF
RELION
3.0
407623
MAXIMUM LIKELIHOOD
MAXIMUM LIKELIHOOD
4V4Q
PDB
experimental model
REAL