2024-03-06
REL
RCSB
RCSB
RCSB
2020-05-02
2021-01-20
2021-01-20
2024-03-06
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)
United States
The Cryo-EM structure of the ubiquinol oxidase from Escherichia coli
Su C-C
ubiquinol oxidase cytochrome bo3, membrane protein, OXIDOREDUCTASE
Su CC
Lyu M
Morgan CE
Bolla JR
Robinson CV
Yu EW
A 'Build and Retrieve' methodology to simultaneously solve cryo-EM structures of membrane proteins.
Nat.Methods
US
18
69
75
2021
33408407
doi:10.1038/s41592-020-01021-2
1548-7105
6wti
FULLOVERLAP
ubiquinol oxidase
ubiquinol oxidase
0
1
2
3
4
Escherichia coli
Cytochrome o ubiquinol oxidase, subunit I
Escherichia coli
0.074424469
1
Escherichia coli
LEVO
MFGKLSLDAVPFHEPIVMVTIAGIILGGLALVGLITYFGKWTYLWKEWLTSVDHKRLGIMYIIVAIVMLLRGFADAIMMR
SQQALASAGEAGFLPPHHYDQIFTAHGVIMIFFVAMPFVIGLMNLVVPLQIGARDVAFPFLNNLSFWFTVVGVILVNVSL
GVGEFAQTGWLAYPPLSGIEYSPGVGVDYWIWSLQLSGIGTTLTGINFFVTILKMRAPGMTMFKMPVFTWASLCANVLII
ASFPILTVTVALLTLDRYLGTHFFTNDMGGNMMMYINLIWAWGHPEVYILILPVFGVFSEIAATFSRKRLFGYTSLVWAT
VCITVLSFIVWLHHFFTMGAGANVNAFFGITTMIIAIPTGVKIFNWLFTMYQGRIVFHSAMLWTIGFIVTFSVGGMTGVL
LAVPGADFVLHNSLFLIAHFHNVIIGGVVFGCFAGMTYWWPKAFGFKLNETWGKRAFWFWIIGFFVAFMPLYALGFMGMT
RRLSQQIDPQFHTMLMIAASGAVLIALGILCLVIQMYVSIRDRDQNRDLTGDPWGGRTLEWATSSPPPFYNFAVVPHVHE
RDAFWEMKEKGEAYKKPDHYEEIHMPKNSGAGIVIAAFSTIFGFAMIWHIWWLAIVGFAGMIITWIVKSFDEDVDYYVPV
AEIEKLENQHFDEITKAGLKNGN
H4KCU1
1.10.3.-
Ubiquinol oxidase subunit 2
Escherichia coli
0.034947203
1
Escherichia coli
LEVO
MRLRKYNKSLGWLSLFAGTVLLSGCNSALLDPKGQIGLEQRSLILTAFGLMLIVVIPAILMAVGFAWKYRASNKDAKYSP
NWSHSNKVEAVVWTVPILIIIFLAVLTWKTTHALEPSKPLAHDEKPITIEVVSMDWKWFFIYPEQGIATVNEIAFPANTP
VYFKVTSNSVMNSFFIPRLGSQIYAMAGMQTRLHLIANEPGTYDGISASYSGPGFSGMKFKAIATPDRAAFDQWVAKAKQ
SPNTMSDMAAFEKLAAPSEYNQVEYFSNVKPDLFADVINKFMAHGKSMDMTQPEGEHSAHEGMEGMDMSHAESAH
A0A024L5V9
Cytochrome o ubiquinol oxidase
Escherichia coli
0.022642566
1
Escherichia coli
LEVO
MATDTLTHATAHAHEHGHHDAGGTKIFGFWIYLMSDCILFSILFATYAVLVNGTAGGPTGKDIFELPFVLVETFLLLFSS
ITYGMAAIAMYKNNKSQVISWLALTWLFGAGFIGMEIYEFHHLIVNGMGPDRSGFLSAFFALVGTHGLHVTSGLIWMAVL
MVQIARRGLTSTNRTRIMCLSLFWHFLDVVWICVFTVVYLMGAM
D6I7E4
Cytochrome o ubiquinol oxidase, subunit IV
Escherichia coli
0.012037401999999999
1
Escherichia coli
LEVO
MSHSTDHSGASHGSVKTYMTGFILSIILTVIPFWMVMTGAASPAVILGTILAMAVVQVLVHLVCFLHMNTKSDEGWNMTA
FVFTVLIIAILVVGSIWIMWNLNYNMMMH
I2RK84
1.10.3.-
PROTOPORPHYRIN IX CONTAINING FE
0.000616487
1
HEM
HEME O
0.000838854
1
HEO
COPPER (II) ION
6.354599999999999e-05
1
CU
Ubiquinone-8
0.000727109
1
UQ8
1,2-Distearoyl-sn-glycerophosphoethanolamine
0.000748065
9
3PE
pentadecyl(tetradecyl)peroxyanhydride
0.000524859
1
U9V
singleParticle
particle
0.5
7.5
Quantifoil R1.2/1.3
COPPER
300
GLOW DISCHARGE
ETHANE
FEI TITAN KRIOS
FLOOD BEAM
BRIGHT FIELD
FIELD EMISSION GUN
300
GATAN K3 BIOQUANTUM (6k x 4k)
50.0
1
2.38
FSC 0.143 CUT-OFF
334222
ANGULAR RECONSTITUTION
ANGULAR RECONSTITUTION
emd_21897_additional_1.map.gz
1
IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)
300
300
300
0
0
0
300
300
300
324.0
324.0
324.0
90.0
90.0
90.0
|
X
Y
Z
-1.2502757
3.3233407
0.00041512496
0.078114316
1.08
1.08
1.08