2024-03-06
REL
RCSB
RCSB
RCSB
2020-05-04
2020-11-04
2020-11-04
2024-03-06
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)
GM094157
United States
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)
G12MD007603
United States
50S subunit of 70S Ribosome Enterococcus faecalis MultiBody refinement
Jogl G
Khayat R
70S, ribosome, pathogen, antibiotic development, antibiotic resistant
Murphy EL
Singh KV
Avila B
Kleffmann T
Gregory ST
Murray BE
Krause KL
Khayat R
Jogl G
Cryo-electron microscopy structure of the 70S ribosome from Enterococcus faecalis.
Sci Rep
UK
10
16301
16301
2020
33004869
doi:10.1038/s41598-020-73199-6
2045-2322
EMD-0656
other EM volume
EMD-0657
other EM volume
EMD-0658
other EM volume
EMD-0659
other EM volume
EMD-0660
other EM volume
6wu9
FULLOVERLAP
Enterococcus faecalis
Enterococcus faecalis
0
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
Enterococcus faecalis OG1RF
2.5
23S rRNA
Enterococcus faecalis OG1RF
0.9426757499999999
1
UUAAGUGAAUAAGGGCGCACGGUGGAUGCCUUGGCACUAGGAGCCGAUGAAGGACGGGACUAACACCGAUAUGCUUUGGG
GAGCUGUAAGUAAGCUAUGAUCCAGAGAUUUCCGAAUGGGGGAACCCAAUAUCUUUUAUAGGAUAUUACUUUUCAGUGAA
UACAUAGCUGAUUAGAGGUAGACGCAGAGAACUGAAACAUCUUAGUACCUGCAGGAAGAGAAAGAAAAUUCGAUUCCCUG
AGUAGCGGCGAGCGAAACGGGAAGAGCCCAAACCAACAAGCUUGCUUGUUGGGGUUGUAGGACUCCGAUAUGGUAGUCUG
UUAGUAUAGUUGAAGGAUUUGGAAAAUUCCGCUAAAGAGGGUGAAAGCCCCGUAGACGAAAUGCUGACAACACCUAGGAG
GAUCCUGAGUACGGCGGAACACGAGAAAUUCCGUCGGAAUCCGCGGGGACCAUCCCGCAAGGCUAAAUACUCCCUAGUGA
CCGAUAGUGAACCAGUACCGUGAGGGAAAGGUGAAAAGCACCCCGGAAGGGGAGUGAAAUAGAUCCUGAAACCGUGUGCC
UACAACAAGUCAAAGCUCGUUAAUGAGUGAUGGCGUGCCUUUUGUAGAAUGAACCGGCGAGUUACGAUUGCAUGCGAGGU
UAAGUCGAAGAGACGGAGCCGCAGCGAAAGCGAGUCUGAAUAGGGCGAAUGAGUAUGUAGUCGUAGACCCGAAACCAUGU
GAUCUACCCAUGUCCAGGUUGAAGGUGCGGUAAAACGCACUGGAGGACCGAACCCACGUACGUUGAAAAGUGCGGGGAUG
AGGUGUGGGUAGCGGAGAAAUUCCAAACGAACUUGGAGAUAGCUGGUUCUCUCCGAAAUAGCUUUAGGGCUAGCCUCGGA
AUUGAGAAUGAUGGAGGUAGAGCACUGUUUGGACUAGGGGCCCAUCUCGGGUUACCGAAUUCAGAUAAACUCCGAAUGCC
AUUCAUUUAUAUCCGGGAGUCAGACUGCGAGUGAUAAGAUCCGUAGUCGAAAGGGAAACAGCCCAGACCACCAGCUAAGG
UCCCAAAAUAUAUGUUAAGUGGAAAAGGAUGUGGGGUUGCACAGACAACUAGGAUGUUGGCUUAGAAGCAGCCACCAUUU
AAAGAGUGCGUAAUAGCUCACUAGUCGAGUGACCCUGCGCCGAAAAUGUACCGGGGCUAAACAUAUUACCGAAGCUGUGG
ACUACACCAUUAGGUGUAGUGGUAGGAGAGCGUUCUAAGGGCGUUGAAGGUCGAUCGUGAGGACGGCUGGAGCGCUUAGA
AGUGAGAAUGCCGGUAUGAGUAGCGAAAGACAGGUGAGAAUCCUGUCCACCGUAUGACUAAGGUUUCCUGGGGAAGGCUC
GUCCGCCCAGGGUUAGUCGGGACCUAAGCCGAGGCCGAUAGGCGUAGGCGAUGGACAACAGGUUGAUAUUCCUGUACCAG
UUGUUUUUGUUUGAGCAAUGGAGGGACGCAGUAGGCUAAGGAAUGCAUGCGAUUGGAAGUGCAUGUCCAAGCAAUGAGUC
UUGAGUAGAGUUAAAUGCUUUACUCUUUAAGGACAAGUUGUGACGGGGAGCGAAAUAAUAGUAGCGAAGUUCCUGACGUC
ACACUGCCAAGAAAAGCUUCUAGUGAGAAAACAACUGCCCGUACCGUAAACCGACACAGGUAGUCGAGGAGAGUAUCCUA
AGGUGAGCGAGCGAACUCUCGUUAAGGAACUCGGCAAAAUGACCCCGUAACUUCGGGAGAAGGGGUGCUGACUUCGGUCA
GCCGCAGUGAAUAGGCCCAAGCGACUGUUUAUCAAAAACACAGGUCUCUGCAAAAUCGUAAGAUGAAGUAUAGGGGCUGA
CGCCUGCCCGGUGCUGGAAGGUUAAGAGGAUGGGUUAGCUUCGGCGAAGCUCAGAAUUGAAGCCCCAGUAAACGGCGGCC
GUAACUAUAACGGUCCUAAGGUAGCGAAAUUCCUUGUCGGGUAAGUUCCGACCCGCACGAAAGGCGUAACGAUUUGGGCA
CUGUCUCAACGAGAGACUCGGUGAAAUUUUAGUACCUGUGAAGAUGCAGGUUACCCGCGACAGGACGGAAAGACCCCAUG
GAGCUUUACUGUAGUUUGAUAUUGAGUGUUUGUACCACAUGUACAGGAUAGGUAGGAGCCGAUGAGACCGGAACGCUAGU
UUCGGAGGAGGCGCUGGUGGGAUACUACCCUUGUGUUAUGAACCCUCUAACCCGCACCACUAAUCGUGGUGGGAGACAGU
GUCAGAUGGGCAGUUUGACUGGGGCGGUCGCCUCCUAAAAGGUAACGGAGGCGCCCAAAGGUUCCCUCAGAAUGGUUGGA
AAUCAUUCGAAGAGUGUAAAGGCAGAAGGGAGCUUGACUGCGAGACCUACAAGUCGAGCAGGGACGAAAGUCGGGCUUAG
UGAUCCGGUGGUUCCGCAUGGAAGGGCCAUCGCUCAACGGAUAAAAGCUACCCUGGGGAUAACAGGCUUAUCUCCCCCAA
GAGUCCACAUCGACGGGGAGGUUUGGCACCUCGAUGUCGGCUCGUCGCAUCCUGGGGCUGUAGUCGGUCCCAAGGGUUGG
GCUGUUCGCCCAUUAAAGCGGCACGCGAGCUGGGUUCAGAACGUCGUGAGACAGUUCGGUCCCUAUCCGUCGCGGGCGUU
GGAAAUUUGAGAGGAGCUGUCCUUAGUACGAGAGGACCGGGAUGGACUUACCGCUGGUGUACCAGUUGUUCUGCCAAGGG
CAUUGCUGGGUAGCUAUGUAGGGAAGGGAUAAACGCUGAAAGCAUCUAAGUGUGAAGCCCACCUCAAGAUGAGAUUUCCC
AUUUCUUUAAGAAAGUAAGACCCCUGAGAGAUGAUCAGGUAGAUAGGUUGGAAGUGGAAGGCUAGUGAUAGUUGGAGCGG
ACCAAUACUAAUCGGUCGAGGACUUAAC
CP002621.1
5S rRNA
Enterococcus faecalis OG1RF
0.037433188
1
UGUGGUGGCGAUAGCGAGAAGGAUACACCUGUUCCCAUGCCGAACACAGAAGUUAAGCUUCUUAGCGCCGAUUGUAGUGA
AGGGUUUCCCUUUGUGAGAGUAGGACGUCGCCACGC
CP002621.1
50S ribosomal protein L3
Enterococcus faecalis OG1RF
0.022498103999999998
1
LEVO
TKGILGKKVGMTQIFTESGELIPVTVVEATPNVVLQVKTVETDGYEAIQVGYQDKREVLSNKPAKGHVAKANTAPKRFIK
EFKNVELGEYEVGKEIKVDVFQAGDVVDVTGTTKGKGFQGAIKRHGQSRGPMSHGSRYHRRPGSMGPVAPNRVFKNKRLA
GRMGGDRVTIQNLEVVKVDVERNVILIKGNIPGAKKSLITIKSAVKA
A0A1B4XKR3
50S ribosomal protein L4
Enterococcus faecalis OG1RF
0.022384504
1
LEVO
PNVALFKQDGTQNGEITLNEEIFGIEPNESVVYDAIIMQRASLRQGTHAVKNRSAVRGGGRKPWRQKGTGRARQGSIRSP
QWRGGGVVFGPTPRSYSYKLPKKVRRLAMKSVLSDKVAENNLVAVEGLSFDAPKTKEFKQVLANLSIDTKVLVVLENGND
FAALSARNLPNVSVVTSDNVSVLDVVSANKVLATQTALTQIEEVLA
A0A1B4XKU7
50S ribosomal protein L5
Enterococcus faecalis OG1RF
0.019863113
1
LEVO
NRLKEKYIKEVTPSLVEKFNYSSVMQTPKVDKIVINMGVGDAVSNAKNLDKAVEELALITGQKPLITKAKKSIAGFRLRE
GMPIGAKVTLRGERMYEFLDKLVTVSLPRVRDFHGVSKKAFDGRGNYTLGIKEQLIFPEVDYDLVDKVRGMDIVIVTTAN
TDEESRELLAQLGMPFQ
A0A1B4XKS2
50S ribosomal protein L6
Enterococcus faecalis OG1RF
0.019164871
1
LEVO
SRIGNKVVVLPAGVEIKQDGNNITVKGPKGELTREFSSDIKMNIEGNEVTFTRPNDSKEMKTIHGTTRANFNNMVVGVSE
GFQKALELIGVGYRAQVQGNKLTLNVGYSHPVEMTAPEGVTFEVPANTQVIVKGINKEVVGELAANIRGVRPPEPYKGKG
IRYVGEFVRRKEGKTG
A0A1B4XKU3
50S ribosomal protein L13
Enterococcus faecalis OG1RF
0.016099585
1
LEVO
MRTTYMAKAGEVERKWYVVDATDVPLGRLSAVVASVLRGKNKPTFTPHVDTGDFVIVINADKVKLTGKKATDKIYYRHSM
YPGGLKSVTAGELRDKNSRRLIETSVKGMLPKNTLGRKQFTKLNVYGGAEHPHAAQQPEVLDITN
A0A1B4XSB2
50S ribosomal protein L14
Enterococcus faecalis OG1RF
0.013165274999999999
1
LEVO
MIQQESRLRVADNSGAREILTIKVLGGSGRKTANIGDVIVATVKQATPGGVVKKGEVVKAVIVRTKSGARRADGSYIKFD
ENAAVIIRDDKSPRGTRIFGPVARELRENNFMKIVSLAPEVL
A0A1B4XKS1
50S ribosomal protein L15
Enterococcus faecalis OG1RF
0.015602867999999999
1
LEVO
MKLHELKPAEGSRQVRNRVGRGTSSGNGKTAGRGQKGQKARSGGGVRLGFEGGQTPLFRRLPKRGFTNINRKDYAVVNLD
TLNRFEDGTEVTPVVLKEAGIVKNEKAGIKVLADGELTKKLTVKAAKFSKSAQEAIEAAGGSIEVI
A0A1B4XKT1
50S ribosomal protein L16
Enterococcus faecalis OG1RF
0.015960901
1
LEVO
MLVPKRVKHRREFRGKMRGEAKGGKEVAFGEWGLQATESHWITNRQIEAARIAMTRYMKRGGKVWIKIFPHKSYTSKAIG
VRMGKGKGAPEGWVSPVKRGKIMFEIAGVPEEVAREALRLASHKLPVKTKIVKREEMGGES
A0A1B4XKU1
50S ribosomal protein L17
Enterococcus faecalis OG1RF
0.014156251
1
LEVO
YRKLGRTSSQRKAMLRDITTDLIINERIVTTEARAKEVRSTVEKMITLGKRGDLHARRQAATFVRNEVASVREEDESIVV
ESALQKLFNDLGPRFAERQGGYTRILKTEPRRGDAAPMVVIEFV
A0A1B4XKX1
50S ribosomal protein L18
Enterococcus faecalis OG1RF
0.012806633999999999
1
LEVO
ITKPDKNKTRQKRHRRVRNKISGTAECPRLNIFRSNKNIYAQVIDDVAGVTLASASALDKEISGGTKTETAAAVGKLVAE
RAAEKGIKKVVFDRGGYLYHGRVQALAEAARENGLEF
A0A1B4XKS7
50S ribosomal protein L19
Enterococcus faecalis OG1RF
0.013113281999999999
1
LEVO
NPLIQELTQEQLRTDIPAFRPGDTVRVHAKVVEGTRERIQLFEGVVIKRRGAGISETYTVRKVSNGVGVERTFPLHTPRV
AQIEVVRYGKVRRAKLYYLRALHGKAARIKEIRR
A0A1B4XPL8
50S ribosomal protein L20
Enterococcus faecalis OG1RF
0.013542957
1
LEVO
ARVKGGTVTRKRRKKVLKLAKGYYGSKHTLFKSAKEQVMNSYYYAFRDRRQKKRDFRKLWIARINAAARMNGLSYSKLMH
GLKLAEIDINRKMLADLAVNDAAAFTALAEQAKDALSK
A0A1B4XM76
50S ribosomal protein L21
Enterococcus faecalis OG1RF
0.011166986
1
LEVO
MYAIIKTGGKQVKVEVGQAIYVEKLNVEAGEKVVFDEVILVGGESTKVGAPTVAGATVEGTVEKHGKQKKVVTFQYKPKK
HSHRKQGHRQPYTKVMIEAINA
A0A1B4XMC1
50S ribosomal protein L22
Enterococcus faecalis OG1RF
0.012126076999999999
1
LEVO
QITSAKATAKTVRTSPRKARLVIDLIRGKSVADAISILKFTPNKSAGIIEKVLMSAVANAENNFDLDVESLVVSEAFVNE
GPTMKRFRPRAKGSASPINKRTSHITVVVTEK
A0A1B4XKT6
50S ribosomal protein L23
Enterococcus faecalis OG1RF
0.010297111000000001
1
LEVO
ELLDVIKRPVITEKSMLAMDEKKYTFEVDTRANKTLVKQAVESAFDVKVANVNILNVRPKFKRMGKYAGYTKKRRKAIVT
LTEDSKEIQ
A0A1B4XKR7
50S ribosomal protein L24
Enterococcus faecalis OG1RF
0.010892797
1
LEVO
MFVKKGDKVKVITGKDKNKEGVVLAAFPKQDKVIVEGVNVVKKHQKPNQAAPQGGILEVEAPIHVSNVMVIDPSNGEATK
VAFKEVDGKKVRVSKKTGEVL
A0A1B4XKV5
50S ribosomal protein L27
Enterococcus faecalis OG1RF
0.008146118
1
LEVO
STSNGRDSESKRLGAKSADGQTVTGGSILYRQRGTKIYPGVNVGIGGDDTLFAKVDGVVRFERKGRDKKQVSVYPV
A0A1B4XMB1
50S ribosomal protein L28
Enterococcus faecalis OG1RF
0.006072187
1
LEVO
AKVCYFTGRKTSSGNNRSHAMNSTKRTVKPNLQKVRVLIDGKPKKVWVSARALK
A0A1B4XRZ8
50S ribosomal protein L29
Enterococcus faecalis OG1RF
0.0072113659999999994
1
LEVO
KVKEIRELTTAEMLDKEKQLKEELFNLRFQLATGQLENTARIKEVRQSIARIKTVLREQAN
A0A1B4XKV0
50S ribosomal protein L30
Enterococcus faecalis OG1RF
0.006234273
1
LEVO
AELKITLKRSVIGRPQNQRATVKALGLGKVNSTVTKPANEAIKGMVNTISHLVDVEEV
A0A1B4XKW1
50S ribosomal protein L32
Enterococcus faecalis OG1RF
0.006217372
1
LEVO
AVPARRTSKAKKAKRRTHYKLTIKGLNACSNCGEMKKSHHVCPACGHYDGKDVMSK
A0A1B4XMM2
50S ribosomal protein L33
Enterococcus faecalis OG1RF
0.006052027
1
LEVO
MRVNITLECTSCKERNYLTNKNKRNNPDRLEKQKYCPRERKVTLHRETK
A0A1B4XR98
50S ribosomal protein L34
Enterococcus faecalis OG1RF
0.005373507
1
LEVO
MKRTYQPNKRKRQKVHGFRKRMSTKNGRRVLASRRRKGRKVISA
A0A1B4XSI4
50S ribosomal protein L35
Enterococcus faecalis OG1RF
0.0074669409999999995
1
LEVO
PKQKTHRGLAKRVKRTGGGGLKRGRAFTSHRFHGKTKKQRRQLRKASMVAKGDYKRIRQQLARM
A0A1B4XM73
50S ribosomal protein L36
Enterococcus faecalis OG1RF
0.0044405339999999995
1
LEVO
MKVRPSVKPMCEHCKVIRRKGRVMVICPANPKHKQRQG
A0A1B4XKT9
ZINC ION
6.5409e-05
3
ZN
singleParticle
particle
1.5
7.5
ETHANE
100
4
FEI VITROBOT MARK IV
Vol = 4 uL, BT = 4 sec, BF = 0, DT = 0, WT = 8 sec.
Sample was monodisperse.
FEI TITAN KRIOS
FLOOD BEAM
BRIGHT FIELD
FIELD EMISSION GUN
300
FEI TITAN KRIOS AUTOGRID HOLDER
NITROGEN
GATAN K2 QUANTUM (4k x 4k)
COUNTING
25.0
1
Ab initio
C1
2.9
FSC 0.143 CUT-OFF
cryoSPARC
0.63
335675
COMMON LINE
RELION
3.1
MAXIMUM LIKELIHOOD
cryoSPARC
0.63
5LI0
PDB
experimental model
4YBB
PDB
experimental model
FLEXIBLE FIT
Correlation Coefficient
REAL
177.0