2024-03-06
REL
RCSB
RCSB
RCSB
2020-09-01
2021-01-20
2021-01-20
2024-03-06
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)
United States
Succinate: quinone oxidoreductase SQR from E.coli K12
Lyu M
Su C-C
Complex, Succinate: quinone oxidoreductase, SdhA, sdhB, SdhC, SdhD, ELECTRON TRANSPORT, ELECTRON TRANSPORT-OXIDOREDUCTASE complex
Su CC
Lyu M
Morgan CE
Bolla JR
Robinson CV
Yu EW
A 'Build and Retrieve' methodology to simultaneously solve cryo-EM structures of membrane proteins.
Nat.Methods
US
18
69
75
2021
33408407
doi:10.1038/s41592-020-01021-2
1548-7105
7jz2
FULLOVERLAP
Succinate: quinone oxidoreductase SQR from E.coli K12
Succinate: quinone oxidoreductase SQR from E.coli K12
0
1
2
3
4
Escherichia coli
K-12
Succinate dehydrogenase flavoprotein subunit
Escherichia coli
K12
0.064502766
3
LEVO
MKLPVREFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIG
DQDAIEYMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLKNHTTI
FSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGAGRIYQSTTNAHINTGDGVGMAIRAGVPVQDMEMWQ
FHPTGIAGAGVLVTEGCRGEGGYLLNKHGERFMERYAPNAKDLAGRDVVARSIMIEIREGRGCDGPWGPHAKLKLDHLGK
EVLESRLPGILELSRTFAHVDPVKEPIPVIPTCHYMMGGIPTKVTGQALTVNEKGEDVVVPGLFAVGEIACVSVHGANRL
GGNSLLDLVVFGRAAGLHLQESIAEQGALRDASESDVEASLDRLNRWNNNRNGEDPVAIRKALQECMQHNFSVFREGDAM
AKGLEQLKVIRERLKNARLDDTSSEFNTQRVECLELDNLMETAYATAVSANFRTESRGAHSRFDFPDRDDENWLCHSLYL
PESESMTRRSVNMEPKLRPAFPPKIRTY
P0AC41
1.3.5.1
Succinate dehydrogenase iron-sulfur subunit
Escherichia coli
K12
0.026800912
3
LEVO
MRLEFSIYRYNPDVDDAPRMQDYTLEADEGRDMMLLDALIQLKEKDPSLSFRRSCREGVCGSDGLNMNGKNGLACITPIS
ALNQPGKKIVIRPLPGLPVIRDLVVDMGQFYAQYEKIKPYLLNNGQNPPAREHLQMPEQREKLDGLYECILCACCSTSCP
SFWWNPDKFIGPAGLLAAYRFLIDSRDTETDSRLDGLSDAFSVFRCHSIMNCVSVCPKGLNPTRAIGHIKSMLLQRNA
P07014
1.3.5.1
Succinate dehydrogenase cytochrome b556 subunit
Escherichia coli
K12
0.0143131
3
LEVO
MIRNVKKQRPVNLDLQTIRFPITAIASILHRVSGVITFVAVGILLWLLGTSLSSPEGFEQASAIMGSFFVKFIMWGILTA
LAYHVVVGIRHMMMDFGYLEETFEAGKRSAKISFVITVVLSLLAGVLVW
P69054
Succinate dehydrogenase hydrophobic membrane anchor subunit
Escherichia coli
K-12
0.012874438
3
LEVO
MVSNASALGRNGVHDFILVRATAIVLTLYIIYMVGFFATSGELTYEVWIGFFASAFTKVFTLLALFSILIHAWIGMWQVL
TDYVKPLALRLMLQLVIVVALVVYVIYGFVVVWGV
I2WBK2
FLAVIN-ADENINE DINUCLEOTIDE
0.0007855499999999999
3
FAD
SODIUM ION
2.299e-05
3
NA
FE2/S2 (INORGANIC) CLUSTER
0.00017581999999999998
3
FES
IRON/SULFUR CLUSTER
0.00035163999999999996
3
SF4
FE3-S4 CLUSTER
0.000295795
3
F3S
1,2-Distearoyl-sn-glycerophosphoethanolamine
0.000748065
3
3PE
PROTOPORPHYRIN IX CONTAINING FE
0.000616487
3
HEM
UBIQUINONE-2
0.000318407
3
UQ2
singleParticle
particle
7.5
ETHANE
FEI TITAN KRIOS
FLOOD BEAM
BRIGHT FIELD
FIELD EMISSION GUN
300
GATAN K3 BIOQUANTUM (6k x 4k)
40.0
1
2.5
FSC 0.143 CUT-OFF
38471
ANGULAR RECONSTITUTION
ANGULAR RECONSTITUTION
emd_22528_additional_1.map.gz
1
IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)
350
350
350
0
0
0
350
350
350
378.0
378.0
378.0
90.0
90.0
90.0
|
X
Y
Z
-0.8188835
1.8964789
-0.0004533901
0.033133026
1.08
1.08
1.08