2021-12-29
REL
RCSB
RCSB
RCSB
2021-09-05
2021-11-24
2021-11-24
2021-12-29
Department of Energy (DOE, United States)
DE-FG02-05ER15646
United States
National Science Foundation (NSF, United States)
MCB-1613022
United States
Structure of photosystem I with bound ferredoxin from Synechococcus sp. PCC 7335 acclimated to far-red light
Gisriel CJ
Flesher DA
Shen G
Wang J
Ho M
Brudvig GW
Bryant DA
Gisriel CJ
Flesher DA
Shen G
Wang J
Ho MY
Brudvig GW
Bryant DA
Structure of a photosystem I-ferredoxin complex from a marine cyanobacterium provides insights into far-red light photoacclimation.
J.Biol.Chem.
US
298
101408
101408
2021
34793839
doi:10.1016/j.jbc.2021.101408
1083-351X
0071
JBCHA3
EMD-24821
associated EM volume
Structure of photosystem I with bound ferredoxin from Synechococcus sp. PCC 7335 acclimated to far-red light
7s3d
FULLOVERLAP
Far-red light-acclimated Photosystem I from Synechococcus sp. PCC 7335
Far-red light-acclimated Photosystem I from Synechococcus sp. PCC 7335
0
1
2
3
4
5
6
7
8
9
10
11
12
Synechococcus sp. PCC 7335
Photosystem I P700 chlorophyll a apoprotein A1
Synechococcus sp. PCC 7335
ATCC 29403 / PCC 7335
0.086411227
3
LEVO
MTASPPKRNQASAATEQSPIPTSFERWAKPGHFDRTLARGPKTTTWIWNLHADAHDFDSHTNDLQDISRKIFSAHFGHLA
VVFVWLSGMYFHGARFSNFSSWMADPTHIRPSAQVVWPLVGQDILNGDMGGGFRGIQITSGLFQMWRGEGFTNEFQLYCT
AIGALVMAGLMIFAGWFHYHVRSPKLEWFQNVQSMLNHHLAGLLGLGSLGWAGHLIHVALPTNKLLDAGVAPQDIPLPHE
FVLDKALMAELYPSFAQGIRPFFTLNWATYSDFLTFNGGLNPVTGGLWMTDIAHHHVAIAVLFIFAGHMYRTNWGIGHSI
RTMLEDARHPKMLPFLSFIGPVGHRGLFEVLTTSWHAQLSINLAMMGSLSIIVAQHMYSMPPYPYLATDYGTVTSLFTHH
MWIGGFLIVGAAAHAGIFMVRDYDPAENVNNVLDRVLRHRDAIISHLVWVCQFLGFHSFAMYCHNDTMRAFGRPQDMFSD
TGIQLQPIFAQWVQHIQTMAVGSAQVAEPLGDALGGIQNIALSGVGTTAPGVASPASYAFGGGLVAVGGKVAMMPISLGT
ADFLIHHIHAFTIHVTVLVLLKGVLFARNSRLIPDKSELGFRFPCDGPGRGGTCQVSAWDHVFLGLFWMYNSIAMVIFHF
FWKMQSDVWGAVDANGTVSHITGGNFAQSSITINGWLRDFLWAQATQVISSYGSALSAYGLMFLAGHFVFAFSLMFLFSG
RGYWQELIESIVWAHNKLRITTAIQPRALSITQGRAVGAAHYLLGSIVTTWAFFLARMAAIG
1.97.1.12
Photosystem I P700 chlorophyll a apoprotein A2
Synechococcus sp. PCC 7335
ATCC 29403 / PCC 7335
0.083207648
3
LEVO
MATKFPKFSQELQQDPTTRRIFYSLATAHDFESHDGMTEESLYQRIFASHFGHLAIIFLWTSGILFHVAWQGNFEAWIKD
PLNISPIAHAIWDPQFGPAAMDAFTPAGAGNPVNFCYSGVYHWWYTIGLRTNGDLFAGAMFLLLLAAVMLYAGWLHLQPR
YRPSLAWFKNAESRLNHHLAGLFGVSSLAWTGHLVHVAIPESRGQHVGWDNFLSMPPHPEGLKPFFTGNWGAYALNPDTS
EHLFNTSQGAGTAILTFLGGFHPQTESLWLTDMAHHHLAIAVIFIIAGHMYRTNFGIGHSIKEMTESLQGPGWTGFFIAP
NTGRGHKGIYDAYNNSLHFQLGWHLACLGVVTSLVAQHMYAMPPYAFIARDYTTTAALYTHHQYIAGFLMLGAFAHGGIF
LIRDYDPVANENNVLARVLDHKEAIISHLSWVSLFLGFHTLALYVHNDCEVAFGSPDKQILVEPVFAQWIQAVHGKALYG
ISSLLSNPDSIASTAWPNHANVWLPGWLEAINNGTNSLFLAIGPGDFLVHHAIALGLHVTTLILVKGALDARGSKLMPDK
KDFGYAFPCDGPGRGGTCDISAWDSVYLATFWMLNTLGWVTFYWHWKHLAIWSGNVAQFNEGSTYLMGWFRDYLWLNSAQ
LINGYNPYGTNNLAIWAWIFLFGHLVWAISFMFLITWRGYWQELIETLMWAHENTPLSFGYPKDKPVALSIVQARLVGLV
HFTVGYIATYGAFLIASTGSRFP
1.97.1.12
PsaC
Synechococcus sp. PCC 7335
0.008809168999999999
3
LEVO
MSHSVKIYDTCIGCTQCVRACPTDVLEMVPWDGCRAGQIAASPRTEDCVGCKRCETACPTDFLSIRVYLGAETSRSMGLA
Y
Photosystem I 16 kDa polypeptide
Synechococcus sp. PCC 7335
ATCC 29403 / PCC 7335
0.017051336
3
LEVO
MALTGSMPKFGGSTGGLLTAAFVEERYAITWTSSKEQVFEMPTGGAATMNEGENLLELARKEQCLALGAQLRTKFKPKIT
DYKIYRIFPNGETTFIHPADGVFPEKVNEGRGYSGKKDRRIGENPNPATIKFSGQNTFETDMKSTDVKTTGLPRP
Photosystem I reaction center subunit IV
Synechococcus sp. PCC 7335
ATCC 29403 / PCC 7335
0.007955112
3
LEVO
MVQRGSKVRILRPESYWFREVGSVASVDQSGIKYPVVVRFSKVNYAGVNTNNFSEAELVEVEAPPKKAAKK
PSI-F
Synechococcus sp. PCC 7335
ATCC 29403 / PCC 7335
0.018569212999999998
3
LEVO
MHKTIRKFFSLLLAAFVWLSVVSPAVAASEGYTDTHLVPCASSPAFNERMQNAPEGYYFDTPYQSYAANLLCGAEGLPHQ
QLRFDRAIDVLIPFGIFFYVAGFIGWSGRAYLISSNRNSKPEETEIFIDVALAIKSFVQGLLWPLLAVKELTTGELTAPV
SEVSVSPR
PsaI2
Synechococcus sp. PCC 7335
ATCC 29403 / PCC 7335
0.007668837999999999
3
LEVO
MVDATQLEGAYAAAWLPWIMIPMITYILPFPIFAIAFLWIEREGGEGGLDIDVMGSNAMSNEAMGRDISS
Photosystem I reaction center subunit IX
Synechococcus sp. PCC 7335
ATCC 29403 / PCC 7335
0.005170094
3
LEVO
MKYFAKYLTSAPIMATVALVSLSVVLIELNHFFPGLQYGTYFHSVP
Photosystem I reaction center subunit PsaK
Synechococcus sp. PCC 7335
ATCC 29403 / PCC 7335
0.008195834
3
LEVO
MLSLVAAAGVVPNTVTWGPNVAIVMIICNLIAFAIGKQVIQIPDAGPAPGTFLGLGLPALLGVTSLGHAIGVGAILGLAN
IGVL
PSI subunit V
Synechococcus sp. PCC 7335
ATCC 29403 / PCC 7335
0.018632201
3
LEVO
MSASDAYISDDPIQPYQGNPQLGNLATPINSSNLAKAFINNLPAYRPGLTPFLRGLEIGMAHGYFLVGPEVVFGPLKEGS
HGANLSGLITAIYITVSACLGISIFALATFQGDPRGTYNSHSRDRLRPLRKKEDWYQLSGGILMGSLGGAIFAYALLENF
ELLDSILRGAVNVG
PsaM
Synechococcus sp. PCC 7335
0.003366065
3
LEVO
MALSDSQIFLALALALIPGFLALRLATELYK
2Fe-2S ferredoxin-type domain-containing protein
Synechococcus sp. PCC 7335
ATCC 29403 / PCC 7335
0.010835725
3
LEVO
MASYKVTLVNETENLNTTIEVADDEYILDAAEEQGIDLPYSCRAGACSTCAGKLTEGTVDQSDQSFLDDDQIEAGYVLTC
VAYPTSDCTVMTHQEEELY
CHLOROPHYLL A ISOMER
0.000893489
3
CL0
CHLOROPHYLL A
0.000893489
255
CLA
Chlorophyll F
0.0009054569999999999
18
F6C
PHYLLOQUINONE
0.000450696
6
PQN
IRON/SULFUR CLUSTER
0.00035163999999999996
9
SF4
BETA-CAROTENE
0.000536873
57
BCR
1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
0.00072297
12
LHG
1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
0.0007871579999999999
9
LMG
DODECYL-BETA-D-MALTOSIDE
0.000510615
39
LMT
CHLORIDE ION
3.5453e-05
3
CL
CALCIUM ION
4.0078e-05
3
CA
FE2/S2 (INORGANIC) CLUSTER
0.00017581999999999998
3
FES
water
1.8015e-05
333
HOH
singleParticle
particle
6.5
ETHANE
FEI TITAN KRIOS
FLOOD BEAM
BRIGHT FIELD
FIELD EMISSION GUN
300
GATAN K3 (6k x 4k)
40.8
1
2.91
FSC 0.143 CUT-OFF
286672
MAXIMUM LIKELIHOOD
MAXIMUM LIKELIHOOD
emd_24821_additional_1.map.gz
1
IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)
384
384
384
0
0
0
384
384
384
316.8
316.8
316.8
90.0
90.0
90.0
|
X
Y
Z
-0.028905828
0.08560341
0.00018521067
0.0025876104
0.825
0.825
0.825
Unsharpened map for Far-red light-acclimated PSI from Synechococcus sp. PCC 7335