2024-01-24RELPDBjPDBjPDBj2020-10-262021-10-202021-10-202024-01-24Japan Society for the Promotion of Science (JSPS)15H05785JapanJapan Society for the Promotion of Science (JSPS)20K15731JapanJapan Science and TechnologyJPMJCR14M1JapanJapan Science and TechnologyJPMJCR14M4JapanJapan Agency for Medical Research and Development (AMED)JP17am010172JapanJapan Agency for Medical Research and Development (AMED)JP18am0101072JapanJapan Agency for Medical Research and Development (AMED)JP19am0101072JapanCryo-EM structure of human XKR8-basigin complex bound to Fab fragmentSakuragi TKanai RXKR8, basigin, scramblase, phospholipid, TRANSPORT PROTEINSakuragi TKanai RTsutsumi ANarita HOnishi ENishino KMiyazaki TBaba TKosako HNakagawa AKikkawa MToyoshima CNagata SThe tertiary structure of the human Xkr8-Basigin complex that scrambles phospholipids at plasma membranes.Nat.Struct.Mol.Biol.US28825834202134625749doi:10.1038/s41594-021-00665-81545-99857dceFULLOVERLAPhuman XKR8-basigin complex bound to Fab fragmenthuman XKR8-basigin complex bound to Fab fragment012340.11human XKR8-basigin complex112Homo sapiensFab fragment134Oryctolagus cuniculusIsoform 2 of BasiginHomo sapiens0.0195928139999999971Spodoptera frugiperdaLEVOAGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMQGSESRFFVSSSQGRSELHIENLNMEADPG
QYRCQGTSSKGSDQAIITLRVRSHLAALWPFLGIVAEVLVLVTIIFIYEKRRKPEDVLDDDDAGSAPLKSSGQHQNDKGK
NVRQRNSSDYKDDDDKP35613XK-related protein 8Homo sapiens0.0459756089999999941Spodoptera frugiperdaLEVOMPWSSRGALLRDLVLGVLGTAAFLLDLGTDLWAAVQYALGGRYLWAALVLALLGLASVALQLFSWLWLRADPAGLHGSQP
PRRCLALLHLLQLGYLYRCVQELRQGLLVWQQEEPSEFDLAYADFLALDISMLRLFETFLETAPQLTLVLAIMLQSGRAE
YYQWVGICTSFLGISWALLDYHRALRTCLPSKPLLGLGSSVIYFLWNLLLLWPRVLAVALFSALFPSYVALHFLGLWLVL
LLWVWLQGTDFMPDPSSEWLYRVTVATILYFSWFNVAEGRTRGRAIIHFAFLLSDSILLVATWVTHSSWLPSGIPLQLWL
PVGCGCFFLGLALRLVYYHWLHPSCCWKPDPDQVDGARSLLSPEGYQLPQNRRMTHLAQKFFPKAKDEAASPVKGVDEFE
NLYFQQ9H6D3Heavy chain of Fab fragmentOryctolagus cuniculus0.0228696389999999971Homo sapiensLEVO(PCA)SVEESGGRLVTPGTPLTLTCTVSGFSLSDYAMNWVRQAPGKGLEWIGIIYASGSRYYASWAKGRFTISKTSTTVD
LKITSPTTEDTATYFCARYYAGSDIWGPGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSG
ALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKLight chain of Fab fragmentOryctolagus cuniculus0.0232618651Homo sapiensLEVOADVVMTQTPSSVSAAVGGTVTINCQASQSISAYLAWYQQKPGQPPKLLIYDASDLASGVSSRFKGSGSGTQFTLTISALE
CADAATYYCQSYYAIITYGAAFGGGTEVVVKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQS
GNSQESVTEQDSKDCTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC1,2-DILINOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE0.00078208199999999991DLPsingleParticleparticle7.0ETHANEFEI TITAN KRIOSFLOOD BEAMBRIGHT FIELDFIELD EMISSION GUN3000.81.8GATAN K3 (6k x 4k)48.013.8FSC 0.143 CUT-OFF62124MAXIMUM LIKELIHOODMAXIMUM LIKELIHOOD