2021-11-17
REL
PDBj
PDBj
PDBj
2021-07-23
2021-10-20
2021-10-20
2021-11-17
Not funded
Cryo-EM structure of VEEV VLP at the 2-fold axes
Zhang X
Xiang Y
Ma J
Ma B
Huang C
Ma B
Huang C
Ma J
Xiang Y
Zhang X
Structure of Venezuelan equine encephalitis virus with its receptor LDLRAD3.
Nature
UK
598
677
681
2021
34646021
doi:10.1038/s41586-021-03909-1
1476-4687
0006
NATUAS
EMD-31566
other EM volume
EMD-31567
other EM volume
EMD-31568
other EM volume
EMD-31569
other EM volume
EMD-31570
other EM volume
EMD-31571
associated EM volume
Cryo-EM structure of VEEV VLP at the 2-fold axes
7ffq
FULLOVERLAP
Venezuelan equine encephalitis virus (strain TC-83)
Venezuelan equine encephalitis virus (strain TC-83)
0
1
2
3
4
Venezuelan equine encephalitis virus (strain TC-83)
Homo sapiens
VIRUS-LIKE PARTICLE
STRAIN
true
true
Capsid protein
Venezuelan equine encephalitis virus (strain TC-83)
TC-83
0.030980801
3
Homo sapiens
LEVO
MFPFQPMYPMQPMPYRNPFAAPRRPWFPRTDPFLAMQVQELTRSMANLTFKQRRDAPPEGPSANKPKKEASQKQKGGGQG
KKKKNQGKKKAKTGPPNPKAQNGNKKKTNKKPGKRQRMVMKLESDKTFPIMLEGKINGYACVVGGKLFRPMHVEGKIDND
VLAALKTKKASKYDLEYADVPQNMRADTFKYTHEKPQGYYSWHHGAVQYENGRFTVPKGVGAKGDSGRPILDNQGRVVAI
VLGGVNEGSRTALSVVMWNEKGVTVKYTPENCEQW
3.4.21.90
Spike glycoprotein E1
Venezuelan equine encephalitis virus (strain TC-83)
TC-83
0.047952065999999995
3
Homo sapiens
LEVO
YEHATTMPSQAGISYNTIVNRAGYAPLPISITPTKIKLIPTVNLEYVTCHYKTGMDSPAIKCCGSQECTPTYRPDEQCKV
FTGVYPFMWGGAYCFCDTENTQVSKAYVMKSDDCLADHAEAYKAHTASVQAFLNITVGEHSIVTTVYVNGETPVNFNGVK
ITAGPLSTAWTPFDRKIVQYAGEIYNYDFPEYGAGQPGAFGDIQSRTVSSSDLYANTNLVLQRPKAGAIHVPYTQAPSGF
EQWKKDKAPSLKFTAPFGCEIYTNPIRAENCAVGSIPLAFDIPDALFTRVSETPTLSAAECTLNECVYSSDFGGIATVKY
SASKSGKCAVHVPSGTATLKEAAVELTEQGSATIHFSTANIHPEFRLQICTSYVTCKGDCHPPKDHIVTHPQYHAQTFTA
AVSKTAWTWLTSLLGGSAVIIIIGLVLATIVAMYVLTNQKHN
assembly protein E3
Venezuelan equine encephalitis virus (strain TC-83)
TC-83
0.006488600999999999
3
Homo sapiens
LEVO
SLVTTMCLLANVTFPCAQPPICYDRKPAETLAMLSVNVDNPGYDELLEAAVKCPGRKRR
Spike glycoprotein E2
Venezuelan equine encephalitis virus (strain TC-83)
TC-83
0.047113746
3
Homo sapiens
LEVO
STEELFNEYKLTRPYMARCIRCAVGSCHSPIAIEAVKSDGHDGYVRLQTSSQYGLDSSGNLKGRTMRYDMHGTIKEIPLH
QVSLYTSRPCHIVDGHGYFLLARCPAGDSITMEFKKDSVRHSCSVPYEVKFNPVGRELYTHPPEHGVEQACQVYAHDAQN
RGAYVEMHLPGSEVDSSLVSLSGSSVTVTPPDGTSALVECECGGTKISETINKTKQFSQCTKKEQCRAYRLQNDKWVYNS
DKLPKAAGATLKGKLHVPFLLADGKCTVPLAPEPMITFGFRSVSLKLHPKNPTYLITRQLADEPHYTHELISEPAVRNFT
VTEKGWEFVWGNHPPKRFWAQETAPGNPHGLPHEVITHYYHRYPMSTILGLSICAAIATVSVAASTWLFCRSRVACLTPY
RLTPNARIPFCLAVLCCARTARA
singleParticle
particle
8.0
ETHANE
FEI TECNAI ARCTICA
FLOOD BEAM
BRIGHT FIELD
FIELD EMISSION GUN
200
GATAN K2 SUMMIT (4k x 4k)
40.0
1
3.5
FSC 0.143 CUT-OFF
370421
MAXIMUM LIKELIHOOD
MAXIMUM LIKELIHOOD