2019-11-13
REL
PDBe
PDBe
PDBe
2016-06-03
2016-08-31
2017-03-29
2019-11-13
Structure of deformed wing virus, a honeybee pathogen
Skubnik K
Novacek J
Fuzik T
Pridal A
Paxton R
Plevka P
Skubnik K
Novacek J
Fuzik T
Pridal A
Paxton RJ
Plevka P
Structure of deformed wing virus, a major honey bee pathogen.
Proc. Natl. Acad. Sci. U.S.A.
US
114
3210
3215
2017
28270616
doi:10.1073/pnas.1615695114
1091-6490
0040
PNASA6
EMD-4009
associated EM volume
5l7q
FULLOVERLAP
Deformed wing virus
Deformed wing virus
0
1
2
3
Virus was purified from honeybee pupae
Deformed wing virus
Apis mellifera
390.0
3
VIRION
OTHER
false
false
VP1
Deformed wing virus
0.028679273
1
LEVO
GEESRNTTVLDTTTTLQSSGFGRAFFGEAFNDLKTLMRRYQLYGQLLLSVTTDKDIDHCMFTFPCLPQGLALDIGSAGSP
HEIFNRCRDGIIPLIASGYRFYRGDLRYKIVFPSNVNSNIWVQHRPDRRLEGWSAAKIVNCDAVSTGQGVYNHGYASHIQ
ITRVNNVIELEVPFYNATCYNYLQAFNASSAASSYAVSLGEISVGFQATSDDIASIVNKPVTIYYSIGDGMQFSQWVGYQ
PMMILDQLPAPVVRAVPE
vp2
Deformed wing virus
0.0283609
1
LEVO
MDNPNPGPDGEGEVELEKDSNVVLTTQRDPSTSIPAPVSVKWSRWTSNDVVDDYATITSRWYQIAEFVWSKDDPFDKELA
RLILPRALLSSIEANSDAICDVPNTIPFKVHAYWRGDMEVRVQINSNKFQVGQLQATWYYSDHENLNISSKRSVYGFSQM
DHALISASASNEAKLVIPFKHVYPFLPTRIVPDWTTGILDMGALNIRVIAPLRMSATGPTTCNVVVFIKLNNSEFTGTSS
GKFYASQIRAKPE
vp3
Deformed wing virus
0.046697582
1
LEVO
DNPSYQQSPRHFVPTGMHSLALGTNLVEPLHALRLDAAGTTQHPVGCAPDEDMTVSSIASRYGLIRRVQWKKDHAKGSLL
LQLDADPFVEQRIEGTNPISLYWFAPVGVVSSMFMQWRGSLEYRFDIIASQFHTGRLIVGYVPGLTASLQLQMDYMKLKS
SSYVVFDLQESNSFTFEVPYVSYRPWWVRKYGGNYLPSSTDAPSTLFMYVQVPLIPMEAVSDTIDINVYVRGGSSFEVCV
PVQPSLGLNWNTDFILRNDEEYRAKTGYAPYYAGVWHSFNNSNSLVFRWGSASDQIAQWPTISVPRGELAFLRIKDGKQA
AVGTQPWRTMVVWPSGHGYNIGIPTYNAERARQLAQHLYGGGSLTDEKAKQLFVPANQQGPGKVSNGNPVWEVMRAPLAT
QRAHIQDFEFIEAIPE
singleParticle
particle
2.5
7.4
Dulbeccos Phosphate Buffered Saline D8537 sigma aldrich
Quantifoil R2/1
COPPER
300
GLOW DISCHARGE
NITROGEN
0.007
ETHANE
100
298
FEI VITROBOT MARK IV
FEI TITAN KRIOS
FLOOD BEAM
BRIGHT FIELD
FIELD EMISSION GUN
300
70.0
2.7
1.0
4.0
75000.
74235.
FEI TITAN KRIOS AUTOGRID HOLDER
NITROGEN
FEI FALCON II (4k x 4k)
COUNTING
4096
4096
2-7
1
26
1.0
15.0
1
141860
CTFFIND
4
CTFFIND4, Grigorieff lab
Model obtained by crystallography with resolution 7.5
3.5
FSC 0.143 CUT-OFF
J3DR
j3dr
136828
PROJECTION MATCHING
3.0
JALIGN
jalign, Jiang lab
PROJECTION MATCHING
3.0
jalingn
jalign, Jiang lab
OTHER
R-factor
REAL