2024-03-27
REL
PDBj
PDBj
PDBj
2016-12-11
2017-01-25
2017-01-25
2024-03-27
National Science Foundation
31570717
China
Cryo-EM structure for Hepatitis A virus empty particle
Wang X
Zhu L
HAV, Neutralizing mechanism, Receptor recognition, Viral entry, VIRUS
Wang X
Zhu L
Dang M
Hu Z
Gao Q
Yuan S
Sun Y
Zhang B
Ren J
Kotecha A
Walter TS
Wang J
Fry EE
Stuart DI
Rao Z
Potent neutralization of hepatitis A virus reveals a receptor mimic mechanism and the receptor recognition site
Proc. Natl. Acad. Sci. U.S.A.
US
114
770
775
2017
28074040
doi:10.1073/pnas.1616502114
1091-6490
0040
PNASA6
EMD-6686
other EM volume
EMD-6688
other EM volume
5wtf
FULLOVERLAP
Hepatitis A virus
Hepatitis A virus
0
1
2
3
Hepatitis A virus
Homo sapiens
6
capsid
300.0
1
VIRION
SEROTYPE
false
false
VP1
Hepatitis A virus
Homo sapiens
0.025161339999999997
1
Chlorocebus aethiops
LEVO
VGAITTIEDPVLAKKVPETFPELKPGESRHTSDHMSIYKFMGRSHFLCTFTFNSNNKEYTFPITLSSTSNPPHGLPSTLR
WFFNLFQLYRGPLDLTIIITGATDVDGMAWFTPVGLAVDTPWVEKESALQIDYKTALGAVRFNTRRTGNIQIRLPWYSYL
YAVSGALDGLGDKTDSTFGLVSIQIANYNHSDEYLSFSCYLSVTEQSEFYFPRAPLNSNAMLST
VP0
Hepatitis A virus
Homo sapiens
0.022765881
1
Chlorocebus aethiops
LEVO
ASYFTSVDQSSVHTAEVGSHQIEPLKTSVDKPGSKKTQGEKFFLIHSARWLTTHALFHEVAKLDVVKLLYNEQFAVQGLL
RYHTYARFGIEIQVQINPTPFQQGGLICAMVPGDQSYGSIASLTVYPHGLLNCNINNVVRIKVPFIYTRGAYHFKDPQYP
VWELTIRVWSELNIGTGTSAYTSLNVLARFTDLELHGLTPLST
VP3
Hepatitis A virus
0.027835692999999998
1
Chlorocebus aethiops
LEVO
MMRNETRVSTTENVVNLSNYEDARAKMSFALDQEDWKSDPSQGGGIKITHFTTWTSIPTLAAQFPFNASDSVGQQIKVIP
VDPYFFQMTNTNPDQKCITALASICQMFCFWRGDLVFDFQVFPTKYHSGRLLFCFVPGNELIDVTGITLKQATTAPCAVM
DIAGVQSTLRFRVPWISDTPYRVNRYTKEAHQKGEYTAIGKLIVYCYNRLTSPSNVAHHVRVNVYLSAINLECFAPLYHA
MDVTTQ
singleParticle
particle
2
7.4
PBS Buffer
C-flat
COPPER
400
GLOW DISCHARGE
ETHANE
90
298
FEI VITROBOT MARK III
blot for 3s seconds before plunging.
This sample was monodisperse
FEI POLARA 300
FLOOD BEAM
BRIGHT FIELD
FIELD EMISSION GUN
300
2.0
1.2
1.2
3.0
3.0
OTHER
GATAN K2 SUMMIT (4k x 4k)
COUNTING
3710
3710
1-25
4
500
1.8
1.2
1
5000
4QPG
45
I
3.9
FSC 0.143 CUT-OFF
RELION
1.3
4000
PROJECTION MATCHING
PROJECTION MATCHING
Correlation coefficient
0.375
RELION
1.3
50
60.0
AB INITIO MODEL
Correlation coefficient
REAL
150.0