2024-03-27
REL
PDBj
PDBj
PDBj
2018-01-08
2019-05-22
2019-05-22
2024-03-27
Structure of Snf2-nucleosome complex at shl-2 in ADP BeFx state
Li M
Xia X
complex, nucleosome, chromatin remodeling, gene regulation, STRUCTURAL PROTEIN-HYDROLASE-DNA complex
Li M
Xia X
Tian Y
Jia Q
Liu X
Lu Y
Li M
Li X
Chen Z
Mechanism of DNA translocation underlying chromatin remodelling by Snf2.
Nature
UK
567
409
413
2019
30867599
doi:10.1038/s41586-019-1029-2
1476-4687
0006
NATUAS
5z3v
FULLOVERLAP
complex of snf2 and nucleosome in ADP BeFx state
complex of snf2 and nucleosome in ADP BeFx state
0
1
2
3
4
5
6
7
Xenopus laevis
0.3
Transcription regulatory protein SNF2
Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
ATCC 204508 / S288c
0.085802805
1
Escherichia coli
LEVO
AYIKLLDQTKDTRITHLLRQTNAFLDSLTRAVKDQQKYTKEMIDSHIKEASEEVDDLSMVPKMKDEEYDDDDDNSNVDYY
NVAHRIKEDIKKQPSILVGGTLKDYQIKGLQWMVSLFNNHLNGILADEMGLGKTIQTISLLTYLYEMKNIRGPYLVIVPL
STLSNWSSEFAKWAPTLRTISFKGSPNERKAKQAKIRAGEFDVVLTTFEYIIKERALLSKVKWVHMIIDEGHRMKNAQSK
LSLTLNTHYHADYRLILTGTPLQNNLPELWALLNFVLPKIFNSVKSFDEWFNTPFANTGGQDKIELSEEETLLVIRRLHK
VLRPFLLRRLKKDVEKELPDKVEKVVKCKMSALQQIMYQQMLKYRRLFIGDQNNKKMVGLRGFNNQIMQLKKICNHPFVF
EEVEDQINPTRETNDDIWRVAGKFELLDRILPKLKATGHRVLIFFQMTQIMDIMEDFLRYINIKYLRLDGHTKSDERSEL
LRLFNAPDSEYLCFILSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQKNEVRILRLITTNSVEEVILERA
YKKLDIDGKVIQAGKFDNKSTSEEQEALLRSLLDAEEERRKKRESGVEEEEELKDSEINEILARNDEEMAVLTRMDEDRS
KKEEELGVKSRLLEKSELPDIYSRDIGAELKREESESAAVYNGRGARERKTATYNDNMSEEQWLRQFEVSDDEKNDKQAR
KQRTKKEDKSEAIDG
P22082
3.6.4.-
Histone H3.2
Xenopus laevis
0.01530393
2
Escherichia coli
LEVO
ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKT
DLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
P84233
Histone H4
Xenopus laevis
0.011263230999999999
2
Escherichia coli
LEVO
SGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKT
VTAMDVVYALKRQGRTLYGFGG
P62799
Histone H2A
Xenopus laevis
0.013978240999999999
2
Escherichia coli
LEVO
SGRGKQGGKTRAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIP
RHLQLAVRNDEELNKLLGRVTIAQGGVLPNIQSVLLPKKTESSKSAKSK
Q6AZJ8
Histone H2B 1.1
Xenopus laevis
0.013524752
2
Escherichia coli
LEVO
AKSAPAPKKGSKKAVTKTQKKDGKKRRKTRKESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHY
NKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSAK
P02281
DNA (167-MER)
synthetic construct
0.051381758
1
(DA)(DT)(DC)(DG)(DA)(DG)(DA)(DA)(DT)(DC)(DC)(DC)(DG)(DG)(DT)(DG)(DC)(DC)(DG)(DA)
(DG)(DG)(DC)(DC)(DG)(DC)(DT)(DC)(DA)(DA)(DT)(DT)(DG)(DG)(DT)(DC)(DG)(DT)(DA)(DG)
(DA)(DC)(DA)(DG)(DC)(DT)(DC)(DT)(DA)(DG)(DC)(DA)(DC)(DC)(DG)(DC)(DT)(DT)(DA)(DA)
(DA)(DC)(DG)(DC)(DA)(DC)(DG)(DT)(DA)(DC)(DG)(DC)(DG)(DC)(DT)(DG)(DT)(DC)(DC)(DC)
(DC)(DC)(DG)(DC)(DG)(DT)(DT)(DT)(DT)(DA)(DA)(DC)(DC)(DG)(DC)(DC)(DA)(DA)(DG)(DG)
(DG)(DG)(DA)(DT)(DT)(DA)(DC)(DT)(DC)(DC)(DC)(DT)(DA)(DG)(DT)(DC)(DT)(DC)(DC)(DA)
(DG)(DG)(DC)(DA)(DC)(DG)(DT)(DG)(DT)(DC)(DA)(DG)(DA)(DT)(DA)(DT)(DA)(DT)(DA)(DC)
(DA)(DT)(DC)(DC)(DT)(DG)(DA)(DA)(DG)(DC)(DT)(DT)(DG)(DT)(DC)(DG)(DA)(DG)(DA)(DA)
(DG)(DT)(DA)(DC)(DG)(DA)(DT)
DNA
DNA (167-MER)
synthetic construct
0.051723949
1
(DA)(DT)(DC)(DG)(DT)(DA)(DC)(DT)(DT)(DC)(DT)(DC)(DG)(DA)(DC)(DA)(DA)(DG)(DC)(DT)
(DT)(DC)(DA)(DG)(DG)(DA)(DT)(DG)(DT)(DA)(DT)(DA)(DT)(DA)(DT)(DC)(DT)(DG)(DA)(DC)
(DA)(DC)(DG)(DT)(DG)(DC)(DC)(DT)(DG)(DG)(DA)(DG)(DA)(DC)(DT)(DA)(DG)(DG)(DG)(DA)
(DG)(DT)(DA)(DA)(DT)(DC)(DC)(DC)(DC)(DT)(DT)(DG)(DG)(DC)(DG)(DG)(DT)(DT)(DA)(DA)
(DA)(DA)(DC)(DG)(DC)(DG)(DG)(DG)(DG)(DG)(DA)(DC)(DA)(DG)(DC)(DG)(DC)(DG)(DT)(DA)
(DC)(DG)(DT)(DG)(DC)(DG)(DT)(DT)(DT)(DA)(DA)(DG)(DC)(DG)(DG)(DT)(DG)(DC)(DT)(DA)
(DG)(DA)(DG)(DC)(DT)(DG)(DT)(DC)(DT)(DA)(DC)(DG)(DA)(DC)(DC)(DA)(DA)(DT)(DT)(DG)
(DA)(DG)(DC)(DG)(DG)(DC)(DC)(DT)(DC)(DG)(DG)(DC)(DA)(DC)(DC)(DG)(DG)(DG)(DA)(DT)
(DT)(DC)(DT)(DC)(DG)(DA)(DT)
DNA
ADENOSINE-5'-DIPHOSPHATE
0.000427201
1
ADP
BERYLLIUM TRIFLUORIDE ION
6.600700000000001e-05
1
BEF
MAGNESIUM ION
2.4305e-05
1
MG
singleParticle
particle
0.3
7.5
Quantifoil R1.2/1.3
COPPER
400
CARBON
HOLEY
GLOW DISCHARGE
AIR
ETHANE
100
281
FEI TITAN KRIOS
FLOOD BEAM
BRIGHT FIELD
FIELD EMISSION GUN
300
70.0
2.7
1.8
1.8
3.2
3.2
22500.0
22500.0
FEI TITAN KRIOS AUTOGRID HOLDER
NITROGEN
GATAN K2 SUMMIT (4k x 4k)
SUPER-RESOLUTION
3838
3710
1-32
4
4247
8.0
50.0
1
5X0Y
C1
4.22
FSC 0.143 CUT-OFF
RELION
2.0
101525
ANGULAR RECONSTITUTION
RELION
ANGULAR RECONSTITUTION
RELION
RIGID BODY FIT
REAL