2024-03-13
REL
RCSB
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2018-04-02
2018-05-23
2018-10-31
2024-03-13
Cryo-EM structure of Seneca Valley Virus-Anthrax Toxin Receptor 1 complex
Jayawardena N
Burga L
Virus-receptor complex, Picornavirus, Senecavirus, Anthrax Toxin Receptor, VIRUS
Jayawardena N
Burga LN
Easingwood RA
Takizawa Y
Wolf M
Bostina M
Structural basis for anthrax toxin receptor 1 recognition by Seneca Valley Virus.
Proc. Natl. Acad. Sci. U.S.A.
US
115
E10934
E10940
2018
30381454
doi:10.1073/pnas.1810664115
1091-6490
0040
PNASA6
6cx1
FULLOVERLAP
Seneca Valley Virus-Anthrax Toxin Receptor 1 complex
Senecavirus A
0
1
2
3
4
5
Senecavirus A
6.5
Capsid
300.0
3
VIRION
STRAIN
false
false
Anthrax toxin receptor 1
Homo sapiens
0.021026668000000002
1
Homo sapiens
LEVO
CYGGFDLYFILDKSGSVLHHWNEIYYFVEQLAHKFISPQLRMSFIVFSTRGTTLMKLTEDREQIRQGLEELQKVLPGGDT
YMHEGFERASEQIYYENRQGYRTASVIIALTDGELHEDLFFYSEREANRSRDLGAIVYAVGVKDFNETQLARIADSKDHV
FPVNDGFQALQGIIHSILKKSC
Q9H6X2
Capsid protein VP1
Senecavirus A
0.028459968999999998
1
LEVO
STDNAETGVIEAGNTDTDFSGELAAPGSNHTNVKFLFDRSRLLNVIKVLEKDAVFPRPFPTQEGAQQDDGYFCLLTPRPT
VASRPATRFGLYANPSGSGVLANTSLDFNFYSLACFTYFRSDLEVTVVSLEPDLEFAVGWFPSGSEYQASSFVYDQLHVP
FHFTGRTPRAFASKGGKVSFVLPWNSVSSVLPVRWGGASKLSSATRGLPAHADWGTIYAFVPRPNEKKSTAVKHVAVYIR
YKNARAWCPSMLPFRSYK
A0A1U9IRU2
Capsid protein VP2
Senecavirus A
0.029870315999999997
1
LEVO
DRVTTQTAGNTAINTQSSLGVLCAYVEDPTKSDPPSSSTDQPTTTFTAIDRWYTGRLNSWTKAVKTFSFQAVPLPGAFLS
RQGGLNGGAFTATLHRHFLMKCGWQVQVQCNLTQFHQGALLVAMVPETTLDVKPDGKAKSLQELNEEQWVEMSDDYRTGK
NMPFQSLGTYYRPPNWTWGPNFINPYQVTVFPHQILNARTSTSVDINVPYIGETPTQSSETQNSWTLLVMVLVPLDYKEG
ATTDPEITFSVRPTSPYFNGLRNRYTAG
A0A1U9IRU2
Capsid protein VP3
Senecavirus A
0.026353937999999997
1
LEVO
GPIPTAPRENSLMFLSTLPDDTVPAYGNVRTPPVNYLPGEITDLLQLARIPTLMAFERVPEPVPASDTYVPYVAVPTQFD
DRPLISFPITLSDPVYQNTLVGAISSNFANYRGCIQITLTFCGPMMARGKFLLSYSPPNGTQPQTLSEAMQCTYSIWDIG
LNSSWTFVVPYISPSDYRETRAITNSVYSADGWFSLHKLTKITLPPDCPQSPCILFFASAGEDYTLRLPVDCNPSYVF
A0A1U9IRU2
Capsid protein VP4
Senecavirus A
0.0059984669999999995
1
LEVO
RGNNGNMTFNYYANTYQNSVDFSTSSSASGAGPGNSRGGLAGLLTNFSGILNPLGYLK
A0A218L148
singleParticle
particle
0.2
7.4
Phosphate Buffer
Quantifoil R1.2/1.3
300
CARBON
HOLEY
12.0
GLOW DISCHARGE
ETHANE
100
293
FEI VITROBOT MARK IV
Blot force 0, 3 sec blotting time.
A homogenous sample containing full capsids
FEI TALOS ARCTICA
FLOOD BEAM
BRIGHT FIELD
FIELD EMISSION GUN
200
2.7
0.5
3.5
73000.0
NITROGEN
FEI FALCON III (4k x 4k)
39.0
1
7457
3CJI
1
I
3.8
FSC 0.143 CUT-OFF
RELION
1.4
6782
ANGULAR RECONSTITUTION
RELION
1.4
ANGULAR RECONSTITUTION
RELION
1.4
1
6782.0
RELION
1.4
RIGID BODY FIT
CC
REAL
100.0