======================================================================= ** Welcome to the EMDataBank ANONYMOUS FTP account ** This FTP site provides access to the 3DEM structures in the EMDataBank. If you have any questions about this archive please send email to help@emdatabank.org ======================================================================= Directories available from this level are: doc/ Documentation including map format and XML schemas obsoleted/ Experimental data for obsolete entries structures/ Experimental data and associated files withdrawn.txt List of entries that have been withdrawn (unreleased entries that have been obsoleted) ======================================================================= Current ftp sites: * ftp.ebi.ac.uk/pub/databases/emdb * ftp.wwpdb.org/pub/emdb * ftp.pdbj.org/pub/emdb FTP site can be copied using UNIX utility rsync: * rsync -rlpt -v -z --delete rsync.ebi.ac.uk::pub/databases/emdb[/structures/EMD-1001] local_emdb * rsync -rlpt -v -z --delete --port=33444 rsync.wwpdb.org::emdb[/structures/EMD-1001] local_emdb * rsync -rlpt -v -z --delete ftp.pdbj.org::emdb[/structures/EMD-1001] local_emdb Alternatively, FTP site can be accessed by web browser and by the following UNIX utilities: * curl * ftp * wget ("wget -m -q ftp://[ftp_site]" is good option for batch download) __________________________ UNIX FTP useful options __________________________ ascii Set the file transfer type to network ASCII. binary Set the file transfer type to support binary image transfer. bye Terminate the FTP session with the remote server and exit ftp. cd remote-directory Change the working directory on the remote machine to remote-directory. cdup Change the remote machine working directory to the parent of the current remote machine working directory. dir [ remote-directory ] [ local-file ] Print a listing of the directory contents in the directory, remote-directory, and, optionally, placing the output in local-file. get remote-file [ local-file ] Retrieve the remote-file and store it on the local machine. help [ command ] Print an informative message about the meaning of command. ls [ remote-directory ] [ local-file ] Print a listing of the contents of a directory on the remote machine. put local-file [ remote-file ] Store a local file on the remote machine. pwd Print the name of the current working directory on the remote machine. quit A synonym for bye. _______________________________________________________________________ ******************************************************* * * This example shows how you can download the map from * entry EMD-1001 * ******************************************************* prompt> ftp [ftp_site (domain name only)] ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Username: anonymous Password: your email, if you wish ftp> ls ^^ for PDBe: ftp> cd pub/databases/emdb/structures/EMD-1001/map ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ for RCSB or PDBj: ftp> cd pub/emdb/structures/EMD-1001/map ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ ftp> bin ^^^ ftp> get emd_1001.map.gz ^^^^^^^^^^^^^^^^^^^ ftp> bye ^^^